This is noted in the Loading Data FAQ, but is sometimes missed, and is almost always not the desired result anyway. gz) can be sent through the Upload tool, but only the first dataset is extracted and loads into the Galaxy history. Extracting tar.gz File Gzip algorithm is designed to compress only a single file. Windows users need to install additional software such as 7zip to open. If you are working with this many datasets, you might need to use your own Galaxy (processing requirements will exceed what is available at public servers). gz file, right-click on the file you want to decompress and select Extract. The original FAQ Loading Data posted includes links to Admin docs that cover the how-to. Should you be working at your own Galaxy server, where you are the administrator, data can be loaded in batch into Data Libraries directly from the file system (or other ways). Or place the data in a location where it can be retrieved by URL. That said if you really do need the files, or some set of the files, as individual datasets, use FTP to load the data in batch. ZIP files don’t carry details of file ownership. unzip sourcecode.zip As the files are extracted they are listed to the terminal window. Collections are designed to simplify complex, multi-sample analyses as shown in this tutorial. To extract the files from a ZIP file, use the unzip command, and provide the name of the ZIP file. Dataset collections - modern studies usually include many samples.Many tutorials in other topics also include the use of data collections. Tutorials that cover advanced Upload functions (numerous files organized into data collections). You’ll probably want to use Data Collections anyway to keep things organized. Hi do not need to load data into individual datasets.
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